Getting Started
Guides & Examples
Project Information
API Reference
pat2vec
pat2vec.main_pat2vec
pat2vec.pat2vec_get_methods
pat2vec.pat2vec_get_methods.get_method_appointments
pat2vec.pat2vec_get_methods.get_method_bed
pat2vec.pat2vec_get_methods.get_method_bloods
pat2vec.pat2vec_get_methods.get_method_bmi
pat2vec.pat2vec_get_methods.get_method_core02
pat2vec.pat2vec_get_methods.get_method_core_resus
pat2vec.pat2vec_get_methods.get_method_current_pat_annotations_mrc_cs
pat2vec.pat2vec_get_methods.get_method_demo
pat2vec.pat2vec_get_methods.get_method_demographics
pat2vec.pat2vec_get_methods.get_method_diagnostics
pat2vec.pat2vec_get_methods.get_method_drugs
pat2vec.pat2vec_get_methods.get_method_hosp_site
pat2vec.pat2vec_get_methods.get_method_news
pat2vec.pat2vec_get_methods.get_method_pat_annotations
pat2vec.pat2vec_get_methods.get_method_report_annotations
pat2vec.pat2vec_get_methods.get_method_smoking
pat2vec.pat2vec_get_methods.get_method_textual_obs_annotations
pat2vec.pat2vec_get_methods.get_method_vte_status
pat2vec.pat2vec_main_methods
pat2vec.pat2vec_main_methods.main_batch
pat2vec.pat2vec_pat_list
pat2vec.pat2vec_pat_list.get_patient_treatment_list
pat2vec.pat2vec_search
pat2vec.pat2vec_search.cogstack_search_methods
pat2vec.pat2vec_search.data_helper_functions
pat2vec.pat2vec_search.matcher
pat2vec.pat2vec_search.nearest
pat2vec.pat2vec_search.search_helper_functions
pat2vec.pat2vec_search.search_multiprocess
pat2vec.patvec_get_batch_methods
pat2vec.patvec_get_batch_methods.get_merged_batches
pat2vec.patvec_get_batch_methods.get_prefetch_batches
pat2vec.patvec_get_batch_methods.main
pat2vec.util
pat2vec.util.anonymisation_data_methods
pat2vec.util.anonymisation_deid_documents
pat2vec.util.calculate_interval
pat2vec.util.clinical_note_splitter
pat2vec.util.compile_requirements
pat2vec.util.config_pat2vec
pat2vec.util.credentials
pat2vec.util.current_pat_batch_path_methods
pat2vec.util.dummy_data_files
pat2vec.util.dummy_data_files.dummy_lists
pat2vec.util.elasticsearch_methods
pat2vec.util.ethnicity_abstractor
pat2vec.util.evaluation_methods
pat2vec.util.evaluation_methods_ploting
pat2vec.util.filter_dataframe_by_timestamp
pat2vec.util.filter_methods
pat2vec.util.generate_date_list
pat2vec.util.get_best_gpu
pat2vec.util.get_dummy_data_cohort_searcher
pat2vec.util.get_dummy_data_medcat_annotation
pat2vec.util.get_start_end_year_month
pat2vec.util.helper_functions
pat2vec.util.impute_data_for_pipe
pat2vec.util.logger_setup
pat2vec.util.medcat_misc_methods
pat2vec.util.methods_annotation
pat2vec.util.methods_annotation_filter_annot_dataframe
pat2vec.util.methods_annotation_get_pat_document_annotation_batch
pat2vec.util.methods_annotation_json_to_dataframe
pat2vec.util.methods_annotation_multi_annots_to_df
pat2vec.util.methods_annotation_regex
pat2vec.util.methods_get
pat2vec.util.methods_get_medcat
pat2vec.util.methods_post_get
pat2vec.util.parse_date
pat2vec.util.post_processing
pat2vec.util.post_processing_build_ipw_dataframe
pat2vec.util.post_processing_build_methods
pat2vec.util.post_processing_get_pat_ipw_record
pat2vec.util.post_processing_medcat
pat2vec.util.post_processing_process_csv_files
pat2vec.util.pre_get_drug_treatment_docs
pat2vec.util.pre_processing
pat2vec.util.presentation_methods
pat2vec.util.testing_helpers