📊 Diagrams

This project includes a collection of diagrams illustrating the system architecture, data pipelines, and feature extraction workflows. You can view the Mermaid definitions or the rendered diagrams below.

📂 System Architecture & Configuration

Diagram	Mermaid	Image
System Architecture	assets/system_architecture.mmd
Configuration	assets/config.mmd

🛠️ Data Pipelines

Diagram	Mermaid	Image
Data Pipeline	assets/data_pipeline.mmd
Main Batch Processing	assets/main_batch.mmd
Example Ingestion	assets/example_ingestion.mmd

🧩 Methods & Post-Processing

Diagram	Mermaid	Image
Methods Annotation	assets/methods_annotation.mmd
Post-Processing Build Methods	assets/post_processing_build_methods.mmd
Post-Processing Anonymisation	assets/post_processing_anonymisation_high_level.mmd

🔍 Feature Extraction

Diagram	Mermaid	Image
Ethnicity Abstractor	assets/ethnicity_abstractor.mmd
Get BMI	assets/get_bmi.mmd
Get Demographics	assets/get_demographics.mmd
Get Diagnostics	assets/get_diagnostics.mmd
Get Drugs	assets/get_drugs.mmd
Get Smoking	assets/get_smoking.mmd
Get News	assets/get_news.mmd
Get Dummy Data Cohort Searcher	assets/get_dummy_data_cohort_searcher.mmd
Get Method Bloods	assets/get_method_bloods.mmd
Get Method Patient Annotations	assets/get_method_pat_annotations.mmd
Get Treatment Docs (No Terms Fuzzy)	assets/get_treatment_docs_by_iterative_multi_term_cohort_searcher_no_terms_fuzzy.mmd