pat2vec

Getting Started

  • Welcome to the pat2vec Wiki!
  • Installation and Setup Guide
  • Comprehensive Configuration Guide for pat2vec
  • Usage

Guides & Examples

  • Blood Test Data Search

Project Information

  • 📊 Diagrams
  • Frequently Asked Questions (FAQ)
  • Contributing to pat2vec

API Reference

  • API Reference
    • Main Pipeline
      • pat2vec.main_pat2vec
      • pat2vec.pat2vec_get_methods
      • pat2vec.pat2vec_main_methods
      • pat2vec.pat2vec_pat_list
      • pat2vec.pat2vec_search
      • pat2vec.patvec_get_batch_methods
      • pat2vec.util
        • pat2vec.util.anonymisation_data_methods
        • pat2vec.util.anonymisation_deid_documents
        • pat2vec.util.calculate_interval
        • pat2vec.util.clinical_note_splitter
        • pat2vec.util.compile_requirements
        • pat2vec.util.config_pat2vec
        • pat2vec.util.credentials
        • pat2vec.util.current_pat_batch_path_methods
        • pat2vec.util.dummy_data_files
        • pat2vec.util.elasticsearch_methods
        • pat2vec.util.ethnicity_abstractor
        • pat2vec.util.evaluation_methods
        • pat2vec.util.evaluation_methods_ploting
        • pat2vec.util.filter_dataframe_by_timestamp
        • pat2vec.util.filter_methods
        • pat2vec.util.generate_date_list
        • pat2vec.util.get_best_gpu
        • pat2vec.util.get_dummy_data_cohort_searcher
        • pat2vec.util.get_dummy_data_medcat_annotation
        • pat2vec.util.get_start_end_year_month
        • pat2vec.util.helper_functions
        • pat2vec.util.impute_data_for_pipe
        • pat2vec.util.logger_setup
        • pat2vec.util.medcat_misc_methods
        • pat2vec.util.methods_annotation
        • pat2vec.util.methods_annotation_filter_annot_dataframe
        • pat2vec.util.methods_annotation_get_pat_document_annotation_batch
        • pat2vec.util.methods_annotation_json_to_dataframe
        • pat2vec.util.methods_annotation_multi_annots_to_df
        • pat2vec.util.methods_annotation_regex
        • pat2vec.util.methods_get
        • pat2vec.util.methods_get_medcat
        • pat2vec.util.methods_post_get
        • pat2vec.util.parse_date
        • pat2vec.util.post_processing
        • pat2vec.util.post_processing_build_ipw_dataframe
        • pat2vec.util.post_processing_build_methods
        • pat2vec.util.post_processing_get_pat_ipw_record
        • pat2vec.util.post_processing_medcat
        • pat2vec.util.post_processing_process_csv_files
        • pat2vec.util.pre_get_drug_treatment_docs
        • pat2vec.util.pre_processing
        • pat2vec.util.presentation_methods
        • pat2vec.util.testing_helpers
      • pat2vec.main_pat2vec.main
pat2vec
  • API Reference
  • pat2vec.util
  • View page source

pat2vec.util

Modules

anonymisation_data_methods

anonymisation_deid_documents

calculate_interval

clinical_note_splitter

compile_requirements

config_pat2vec

credentials

current_pat_batch_path_methods

dummy_data_files

elasticsearch_methods

ethnicity_abstractor

evaluation_methods

evaluation_methods_ploting

filter_dataframe_by_timestamp

filter_methods

generate_date_list

get_best_gpu

get_dummy_data_cohort_searcher

get_dummy_data_medcat_annotation

get_start_end_year_month

helper_functions

impute_data_for_pipe

logger_setup

medcat_misc_methods

methods_annotation

methods_annotation_filter_annot_dataframe

methods_annotation_get_pat_document_annotation_batch

methods_annotation_json_to_dataframe

methods_annotation_multi_annots_to_df

methods_annotation_regex

methods_get

methods_get_medcat

methods_post_get

parse_date

post_processing

post_processing_build_ipw_dataframe

post_processing_build_methods

post_processing_get_pat_ipw_record

post_processing_medcat

post_processing_process_csv_files

pre_get_drug_treatment_docs

pre_processing

presentation_methods

testing_helpers

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