All modules for which code is available
- pat2vec.main_pat2vec
- pat2vec.pat2vec_get_methods.get_method_appointments
- pat2vec.pat2vec_get_methods.get_method_bed
- pat2vec.pat2vec_get_methods.get_method_bloods
- pat2vec.pat2vec_get_methods.get_method_bmi
- pat2vec.pat2vec_get_methods.get_method_core02
- pat2vec.pat2vec_get_methods.get_method_core_resus
- pat2vec.pat2vec_get_methods.get_method_current_pat_annotations_mrc_cs
- pat2vec.pat2vec_get_methods.get_method_demo
- pat2vec.pat2vec_get_methods.get_method_demographics
- pat2vec.pat2vec_get_methods.get_method_diagnostics
- pat2vec.pat2vec_get_methods.get_method_drugs
- pat2vec.pat2vec_get_methods.get_method_hosp_site
- pat2vec.pat2vec_get_methods.get_method_news
- pat2vec.pat2vec_get_methods.get_method_pat_annotations
- pat2vec.pat2vec_get_methods.get_method_report_annotations
- pat2vec.pat2vec_get_methods.get_method_smoking
- pat2vec.pat2vec_get_methods.get_method_textual_obs_annotations
- pat2vec.pat2vec_get_methods.get_method_vte_status
- pat2vec.pat2vec_main_methods.main_batch
- pat2vec.pat2vec_pat_list.get_patient_treatment_list
- pat2vec.pat2vec_search.cogstack_search_methods
- pat2vec.pat2vec_search.data_helper_functions
- pat2vec.pat2vec_search.matcher
- pat2vec.pat2vec_search.nearest
- pat2vec.pat2vec_search.search_helper_functions
- pat2vec.pat2vec_search.search_multiprocess
- pat2vec.patvec_get_batch_methods.get_merged_batches
- pat2vec.patvec_get_batch_methods.get_prefetch_batches
- pat2vec.patvec_get_batch_methods.main
- pat2vec.util.anonymisation_data_methods
- pat2vec.util.anonymisation_deid_documents
- pat2vec.util.calculate_interval
- pat2vec.util.clinical_note_splitter
- pat2vec.util.compile_requirements
- pat2vec.util.config_pat2vec
- pat2vec.util.current_pat_batch_path_methods
- pat2vec.util.elasticsearch_methods
- pat2vec.util.ethnicity_abstractor
- pat2vec.util.evaluation_methods
- pat2vec.util.evaluation_methods_ploting
- pat2vec.util.filter_dataframe_by_timestamp
- pat2vec.util.filter_methods
- pat2vec.util.generate_date_list
- pat2vec.util.get_best_gpu
- pat2vec.util.get_dummy_data_cohort_searcher
- pat2vec.util.get_dummy_data_medcat_annotation
- pat2vec.util.get_start_end_year_month
- pat2vec.util.helper_functions
- pat2vec.util.impute_data_for_pipe
- pat2vec.util.logger_setup
- pat2vec.util.medcat_misc_methods
- pat2vec.util.methods_annotation
- pat2vec.util.methods_annotation_filter_annot_dataframe
- pat2vec.util.methods_annotation_get_pat_document_annotation_batch
- pat2vec.util.methods_annotation_json_to_dataframe
- pat2vec.util.methods_annotation_multi_annots_to_df
- pat2vec.util.methods_annotation_regex
- pat2vec.util.methods_get
- pat2vec.util.methods_get_medcat
- pat2vec.util.methods_post_get
- pat2vec.util.parse_date
- pat2vec.util.post_processing
- pat2vec.util.post_processing_build_ipw_dataframe
- pat2vec.util.post_processing_build_methods
- pat2vec.util.post_processing_get_pat_ipw_record
- pat2vec.util.post_processing_medcat
- pat2vec.util.post_processing_process_csv_files
- pat2vec.util.pre_get_drug_treatment_docs
- pat2vec.util.pre_processing
- pat2vec.util.presentation_methods
- pat2vec.util.testing_helpers